Visualizing model structure

PySB currently includes a handful of tools for visualizing the structure of models. These can be supplemented with existing tools for visualizing the structure of rule-based models (e.g., contact maps and influence maps for Kappa models).

• Render a model’s reaction network (pysb.tools.render_reactions)
  • Usage
  • Output for Robertson example model
  • run()
• Render a model’s species (pysb.tools.render_species)
  • run()